SNX1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SNX1

Sorting nexin-1 isoform a. (521 aa)

Predicted Functional Partners:

VPS29

0.993

SNX2

0.993

SNX6

0.978

VPS35

0.977

ENSCJAP00000067149

0.928

ENSCJAP00000069046

0.928

VPS26A

0.918

SNX5

0.900

SNX27

0.875

ENSCJAP00000054748

0.874

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000054748	ENSCJAP00000067149	ENSCJAP00000054748	ENSCJAP00000067149	Uncharacterized protein.	Uncharacterized protein.	0.684
ENSCJAP00000054748	ENSCJAP00000069046	ENSCJAP00000054748	ENSCJAP00000069046	Uncharacterized protein.	J domain-containing protein.	0.684
ENSCJAP00000054748	SNX1	ENSCJAP00000054748	ENSCJAP00000009069	Uncharacterized protein.	Sorting nexin-1 isoform a.	0.874
ENSCJAP00000054748	SNX2	ENSCJAP00000054748	ENSCJAP00000061662	Uncharacterized protein.	Sorting nexin-2.	0.873
ENSCJAP00000054748	SNX27	ENSCJAP00000054748	ENSCJAP00000069557	Uncharacterized protein.	Sorting nexin family member 27 isoform 1 (Predicted).	0.617
ENSCJAP00000054748	SNX5	ENSCJAP00000054748	ENSCJAP00000009170	Uncharacterized protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.423
ENSCJAP00000054748	VPS26A	ENSCJAP00000054748	ENSCJAP00000023695	Uncharacterized protein.	Vacuolar protein sorting-associated protein 26A isoform 1.	0.975
ENSCJAP00000054748	VPS29	ENSCJAP00000054748	ENSCJAP00000017076	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.965
ENSCJAP00000067149	ENSCJAP00000054748	ENSCJAP00000067149	ENSCJAP00000054748	Uncharacterized protein.	Uncharacterized protein.	0.684
ENSCJAP00000067149	ENSCJAP00000069046	ENSCJAP00000067149	ENSCJAP00000069046	Uncharacterized protein.	J domain-containing protein.	0.985
ENSCJAP00000067149	SNX1	ENSCJAP00000067149	ENSCJAP00000009069	Uncharacterized protein.	Sorting nexin-1 isoform a.	0.928
ENSCJAP00000067149	SNX2	ENSCJAP00000067149	ENSCJAP00000061662	Uncharacterized protein.	Sorting nexin-2.	0.928
ENSCJAP00000067149	VPS29	ENSCJAP00000067149	ENSCJAP00000017076	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.480
ENSCJAP00000067149	VPS35	ENSCJAP00000067149	ENSCJAP00000073732	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.684
ENSCJAP00000069046	ENSCJAP00000054748	ENSCJAP00000069046	ENSCJAP00000054748	J domain-containing protein.	Uncharacterized protein.	0.684
ENSCJAP00000069046	ENSCJAP00000067149	ENSCJAP00000069046	ENSCJAP00000067149	J domain-containing protein.	Uncharacterized protein.	0.985
ENSCJAP00000069046	SNX1	ENSCJAP00000069046	ENSCJAP00000009069	J domain-containing protein.	Sorting nexin-1 isoform a.	0.928
ENSCJAP00000069046	SNX2	ENSCJAP00000069046	ENSCJAP00000061662	J domain-containing protein.	Sorting nexin-2.	0.928
ENSCJAP00000069046	VPS29	ENSCJAP00000069046	ENSCJAP00000017076	J domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.480
ENSCJAP00000069046	VPS35	ENSCJAP00000069046	ENSCJAP00000073732	J domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.684