STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX59Putative ATP-dependent RNA helicase DDX59. (620 aa)    
Predicted Functional Partners:
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.
   
 0.797
MRPL20
Mitochondrial ribosomal protein L20.
   
 
 0.754
EBNA1BP2
EBNA1 binding protein 2.
   
 0.709
MRPS15
28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
  
 0.698
MTREX
Superkiller viralicidic activity 2-like 2.
   
 0.689
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.681
INO80E
INO80 complex subunit E.
    
 0.681
NOP58
NOP58 ribonucleoprotein.
  
 
 0.673
MRPL44
Mitochondrial ribosomal protein L44.
   
 
 0.664
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 0.647
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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