STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4BU-box domain-containing protein. (1302 aa)    
Predicted Functional Partners:
TRIP12
Uncharacterized protein.
   
 0.920
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 
 0.919
YOD1
YOD1 deubiquitinase.
    
 
 0.901
UFD1
Uncharacterized protein.
    
 
 0.897
SPATA5
Spermatogenesis associated 5.
   
 
 0.827
FAAP100
Fanconi anemia-associated protein of 100 kDa isoform b.
    
 
 0.813
NPLOC4
Nuclear protein localization protein 4 homolog.
    
 
 0.813
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 0.792
UBE2D2
Ubiquitin-conjugating enzyme E2 D2 isoform 1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.785
RAD23B
UV excision repair protein RAD23 homolog B isoform 1.
   
 0.782
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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