Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMG5SMG5 nonsense mediated mRNA decay factor. (1016 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
   
 0.997
SMG7
Uncharacterized protein.
   
0.991
SMG6
Telomerase-binding protein EST1A isoform 1.
   
0.991
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.984
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.977
SMG9
SMG9 nonsense mediated mRNA decay factor.
   
 
 0.975
SMG8
SMG8 nonsense mediated mRNA decay factor.
     
 0.973
UPF3A
Regulator of nonsense transcripts 3A isoform hUpf3p.
   
 0.933
ENSCJAP00000070523
Smg4_UPF3 domain-containing protein.
   
 0.933
ENSCJAP00000075429
Smg4_UPF3 domain-containing protein.
   
 0.933
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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