STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUGP1SURP and G-patch domain-containing protein 1. (645 aa)    
Predicted Functional Partners:
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 0.979
RBM10
RNA binding motif protein 10.
   
 0.973
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
 0.964
RBM39
RNA binding motif protein 39.
   
 0.950
RBM17
RNA binding motif protein 17.
   
 
 0.942
HTATSF1
HIV-1 Tat specific factor 1.
     
 0.930
RBM5
RNA binding motif protein 5.
   
 0.924
RBM6
RNA-binding protein 6 isoform 1.
   
 0.921
CDC40
Cell division cycle 40.
     
  0.919
TCERG1
Transcription elongation regulator 1.
   
 
  0.919
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.