STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMCN1Hemicentin 1. (5634 aa)    
Predicted Functional Partners:
C1orf116
Chromosome 1 open reading frame 116.
      
 0.620
FRAS1
Fraser extracellular matrix complex subunit 1.
      
 0.590
SCEL
Sciellin.
    
 
 0.574
SMARCA1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.
      
 0.563
DTX3L
Deltex E3 ubiquitin ligase 3L.
    
 
 0.512
KRT17
Keratin 17; Belongs to the intermediate filament family.
      
 0.503
PARP9
Poly(ADP-ribose) polymerase family member 9.
   
  
 0.503
ZFP36L2
Zinc finger protein 36, C3H1 type-like 2.
      
 0.502
ADIRF
Adipose most abundant gene transcript 2 protein.
      
 0.501
FOSB
FosB proto-oncogene, AP-1 transcription factor subunit.
      
 0.462
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.