STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRG4Proteoglycan 4. (1013 aa)    
Predicted Functional Partners:
CSPG4
Chondroitin sulfate proteoglycan 4.
      
 0.614
TIMP2
NTR domain-containing protein.
    
 0.578
ACAN
Aggrecan.
    
 0.575
HPX
Hemopexin; Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
      
 0.515
CD44
CD44 molecule (Indian blood group).
   
 0.499
FGFR1OP2
FGFR1 oncogene partner 2 isoform 1.
      
 0.459
COL2A1
Collagen type II alpha 1 chain.
   
 0.422
TIMP4
TIMP metallopeptidase inhibitor 4.
    
 0.409
TIMP1
TIMP metallopeptidase inhibitor 1.
    
 0.409
TIMP3
Uncharacterized protein.
    
 0.409
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.