STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEMFNuclear export mediator factor NEMF. (1077 aa)    
Predicted Functional Partners:
LTN1
Listerin E3 ubiquitin protein ligase 1.
    
 0.966
TCF25
Transcription factor 25.
    
 
 0.787
RPL35
Ribosomal protein L35.
    
 
 0.754
ANKZF1
Ankyrin repeat and zinc finger domain-containing protein 1.
   
 
 0.707
THOC2
THO complex subunit 2; Required for efficient export of polyadenylated RNA and spliced mRNA. Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and which specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cy [...]
   
    0.700
RPL8
Ribosomal_L2_C domain-containing protein.
    
   0.694
ENSCJAP00000075020
Ribosomal_L2_C domain-containing protein.
    
   0.694
RPL11
60S ribosomal protein L11 isoform 1; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.687
ENSCJAP00000072852
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.687
RPS16
Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
 
  
   0.681
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.