STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF8PHD finger protein 8. (1060 aa)    
Predicted Functional Partners:
TOPBP1
DNA topoisomerase II binding protein 1.
    
 
 0.742
BBS7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
     
 0.669
KDM6B
Lysine-specific demethylase 6B.
   
 0.625
FBXL19
F-box and leucine rich repeat protein 19.
 
 
 
  0.618
LOC100394455
Histone H3; Belongs to the histone H3 family.
    
 0.610
BAZ2B
Bromodomain adjacent to zinc finger domain 2B.
   
 
 0.588
ARID5B
AT-rich interaction domain 5B.
     
 0.547
F6WC44_CALJA
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.535
SKP1
S-phase kinase-associated protein 1 isoform b; Belongs to the SKP1 family.
    
 0.535
ENSCJAP00000074230
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.535
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.