STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMED1Transmembrane emp24 domain-containing protein 1. (227 aa)    
Predicted Functional Partners:
TMEM33
Transmembrane protein 33.
   
  
 0.822
ENDOD1
Endonuclease domain-containing 1 protein.
      
 0.803
SPPL3
Signal peptide peptidase-like 3.
   
  
 0.778
BPIFB1
BPI fold containing family B member 1.
      
 0.778
RNF26
RING finger protein 26.
    
 
 0.713
C6orf58
Chromosome 6 open reading frame 58.
      
 0.705
DOK2
Docking protein 2.
      
 0.696
MFAP4
Fibrinogen C-terminal domain-containing protein.
      
 0.688
ENSCJAP00000068279
Uncharacterized protein.
   
 
 0.678
TMED10
Transmembrane emp24 domain-containing protein 10.
   
 
 0.678
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.