STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKD2Polycystin 2, transient receptor potential cation channel. (973 aa)    
Predicted Functional Partners:
PKHD1
PKHD1 ciliary IPT domain containing fibrocystin/polyductin.
      
 0.844
PKD1L3
Polycystin 1 like 3, transient receptor potential channel interacting.
    
 
0.822
PKDREJ
Polycystin family receptor for egg jelly.
    
0.790
TRPC1
Transient receptor potential cation channel subfamily C member 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.765
ARL13B
ADP ribosylation factor like GTPase 13B.
      
 0.747
ARL3
ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.
     
 0.720
EXOC5
Exocyst complex component 5.
     
 0.712
IFT20
Uncharacterized protein.
   
  
 0.687
IFT20-2
Uncharacterized protein.
   
  
 0.687
BBS1
BBS1 domain-containing protein.
      
 0.679
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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