STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEF1Peflin. (284 aa)    
Predicted Functional Partners:
SEC31A
WD_REPEATS_REGION domain-containing protein.
    
 0.870
FAM83B
FAM83 domain-containing protein.
      
 0.865
PDCD6IP
Programmed cell death 6-interacting protein isoform 2.
    
 
 0.794
SFN
Stratifin; Belongs to the 14-3-3 family.
   
  
 0.738
HEBP2
Heme-binding protein 2.
    
 
 0.719
KLHL12
Kelch like family member 12.
    
 0.692
SEC31B
SEC31 homolog B, COPII coat complex component.
    
 
 0.691
TINAGL1
Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family.
      
 0.677
CAST
Calpastatin.
   
 0.590
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.585
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.