STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPTCOpticin. (332 aa)    
Predicted Functional Partners:
MMP13
Matrix metallopeptidase 13.
    
  0.916
GUCY2F
Guanylate cyclase.
   
 
 0.832
MMP7
Matrix metallopeptidase 7.
    
 0.813
PRPH2
Peripherin 2.
   
 
 0.794
RBP3
Retinol binding protein 3.
   
  
 0.782
AMELX
Amelogenin X-linked.
   
   0.773
F7IJY4_CALJA
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
  0.770
GUCY2D
Guanylate cyclase.
   
 
 0.723
NIPSNAP3A
Protein NipSnap homolog 3A.
     
 0.696
BPIFA2
BPI fold containing family A member 2.
   
    0.654
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.