Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTF1RTF1 homolog, Paf1/RNA polymerase II complex component. (712 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
PAF1
RNA polymerase II-associated factor 1 homolog isoform 1.
   
 0.991
CDC73
Cell division cycle 73.
   
 0.990
WDR61
WD repeat-containing protein 61.
    
 0.978
ENSCJAP00000073742
CDC73_N domain-containing protein.
   
 0.932
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.916
CHD1
Chromodomain helicase DNA binding protein 1.
   
 
 0.914
SSRP1
HMG box domain-containing protein.
   
 0.911
SUPT6H
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
   
 
 0.862
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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