STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM7PDZ and LIM domain 7. (457 aa)    
Predicted Functional Partners:
DBN1
Drebrin 1.
 
 
  
 0.688
RET
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
   
 0.616
VCL
Vinculin.
   
 0.540
WWP2
E3 ubiquitin-protein ligase.
    
 
 0.533
SMURF1
E3 ubiquitin-protein ligase.
    
 
 0.488
PSMB9
Proteasome subunit beta.
      
 0.477
PARVB
Parvin beta.
   
 0.474
PARVG
Gamma-parvin isoform 1.
   
 0.474
PARVA
Parvin alpha.
   
 0.474
GAS7
Growth arrest-specific protein 7 isoform c.
   
 
 0.473
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.