STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DBX1Developing brain homeobox 1. (345 aa)    
Predicted Functional Partners:
OLIG3
Oligodendrocyte transcription factor 3.
   
  
 0.742
LHX2
LIM/homeobox protein Lhx2.
    
 
 0.640
LHX6
LIM homeobox 6.
    
 
 0.628
ATOH1
Atonal bHLH transcription factor 1.
   
  
 0.564
TAL2
T-cell acute lymphocytic leukemia protein 2.
    
 
 0.530
TTC28
Tetratricopeptide repeat domain 28.
   
  
 0.513
TBR1
T-box brain transcription factor 1.
    
 
 0.512
LMO3
LIM domain only 3.
    
 
 0.505
ISLR2
Immunoglobulin superfamily containing leucine rich repeat 2.
      
 0.501
NLE1
Notchless homolog 1.
      
 0.477
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.