TBX6 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TBX6

Uncharacterized protein. (436 aa)

Predicted Functional Partners:

MESP2

0.834

MSGN1

0.699

MEOX1

0.596

WNT3A

0.563

FOXA2

0.547

WNT3

0.547

EVX1

0.532

FRS3

0.529

XPO7

0.517

ENSCJAP00000056719

0.516

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000056719	MESP2	ENSCJAP00000056719	ENSCJAP00000013151	Beta-1,3-N-acetylglucosaminyltransferase.	Uncharacterized protein.	0.761
ENSCJAP00000056719	TBX6	ENSCJAP00000056719	ENSCJAP00000012659	Beta-1,3-N-acetylglucosaminyltransferase.	Uncharacterized protein.	0.516
EVX1	FOXA2	ENSCJAP00000015141	ENSCJAP00000010628	Homeobox even-skipped homolog protein 1.	Forkhead box A2.	0.446
EVX1	TBX6	ENSCJAP00000015141	ENSCJAP00000012659	Homeobox even-skipped homolog protein 1.	Uncharacterized protein.	0.532
FOXA2	EVX1	ENSCJAP00000010628	ENSCJAP00000015141	Forkhead box A2.	Homeobox even-skipped homolog protein 1.	0.446
FOXA2	TBX6	ENSCJAP00000010628	ENSCJAP00000012659	Forkhead box A2.	Uncharacterized protein.	0.547
FOXA2	WNT3	ENSCJAP00000010628	ENSCJAP00000030660	Forkhead box A2.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.557
FOXA2	WNT3A	ENSCJAP00000010628	ENSCJAP00000071797	Forkhead box A2.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.507
FRS3	TBX6	ENSCJAP00000067798	ENSCJAP00000012659	Fibroblast growth factor receptor substrate 3.	Uncharacterized protein.	0.529
MEOX1	TBX6	ENSCJAP00000067080	ENSCJAP00000012659	Mesenchyme homeobox 1.	Uncharacterized protein.	0.596
MESP2	ENSCJAP00000056719	ENSCJAP00000013151	ENSCJAP00000056719	Uncharacterized protein.	Beta-1,3-N-acetylglucosaminyltransferase.	0.761
MESP2	TBX6	ENSCJAP00000013151	ENSCJAP00000012659	Uncharacterized protein.	Uncharacterized protein.	0.834
MSGN1	TBX6	ENSCJAP00000013532	ENSCJAP00000012659	Mesogenin 1.	Uncharacterized protein.	0.699
TBX6	ENSCJAP00000056719	ENSCJAP00000012659	ENSCJAP00000056719	Uncharacterized protein.	Beta-1,3-N-acetylglucosaminyltransferase.	0.516
TBX6	EVX1	ENSCJAP00000012659	ENSCJAP00000015141	Uncharacterized protein.	Homeobox even-skipped homolog protein 1.	0.532
TBX6	FOXA2	ENSCJAP00000012659	ENSCJAP00000010628	Uncharacterized protein.	Forkhead box A2.	0.547
TBX6	FRS3	ENSCJAP00000012659	ENSCJAP00000067798	Uncharacterized protein.	Fibroblast growth factor receptor substrate 3.	0.529
TBX6	MEOX1	ENSCJAP00000012659	ENSCJAP00000067080	Uncharacterized protein.	Mesenchyme homeobox 1.	0.596
TBX6	MESP2	ENSCJAP00000012659	ENSCJAP00000013151	Uncharacterized protein.	Uncharacterized protein.	0.834
TBX6	MSGN1	ENSCJAP00000012659	ENSCJAP00000013532	Uncharacterized protein.	Mesogenin 1.	0.699