STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABEPKRab9 effector protein with kelch motifs isoform a. (372 aa)    
Predicted Functional Partners:
TTC8
Tetratricopeptide repeat domain 8.
      
 0.856
ALDH6A1
Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.
      
 0.808
ZNF358
Zinc finger protein 358.
    
 
 0.775
LRRC8E
Leucine-rich repeat-containing protein 8E isoform 1.
      
 0.711
VAMP3
Vesicle associated membrane protein 3.
     
 0.677
ENSCJAP00000072696
Uncharacterized protein.
     
 0.677
MRC2
Mannose receptor C type 2.
    
 
 0.661
CKAP5
Cytoskeleton-associated protein 5 isoform a.
    
 
 0.659
RHOBTB3
Rho-related BTB domain-containing protein 3.
   
 0.607
TIMM21
Translocase of inner mitochondrial membrane 21.
   
    0.585
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.