AFTPH protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFTPH

Aftiphilin isoform c. (907 aa)

Predicted Functional Partners:

AP1S2

0.672

ENSCJAP00000071587

0.672

AP1S3

0.628

SYNRG

0.624

AP1M1

0.604

AP1M2-2

0.604

AP1M2

0.604

AGFG1

0.603

RASL10A

0.583

HPS5

0.581

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFTPH	AGFG1	ENSCJAP00000012691	ENSCJAP00000023909	Aftiphilin isoform c.	Arf-GAP domain and FG repeat-containing protein 1 isoform 1.	0.603
AFTPH	AP1M1	ENSCJAP00000012691	ENSCJAP00000025878	Aftiphilin isoform c.	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.604
AFTPH	AP1M2	ENSCJAP00000012691	ENSCJAP00000063951	Aftiphilin isoform c.	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.604
AFTPH	AP1M2-2	ENSCJAP00000012691	ENSCJAP00000052882	Aftiphilin isoform c.	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.604
AFTPH	AP1S2	ENSCJAP00000012691	ENSCJAP00000069606	Aftiphilin isoform c.	Clat_adaptor_s domain-containing protein.	0.672
AFTPH	AP1S3	ENSCJAP00000012691	ENSCJAP00000053761	Aftiphilin isoform c.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.628
AFTPH	ENSCJAP00000071587	ENSCJAP00000012691	ENSCJAP00000071587	Aftiphilin isoform c.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.672
AFTPH	HPS5	ENSCJAP00000012691	ENSCJAP00000013372	Aftiphilin isoform c.	Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.	0.581
AFTPH	RASL10A	ENSCJAP00000012691	ENSCJAP00000037159	Aftiphilin isoform c.	Ras-like protein family member 10A.	0.583
AFTPH	SYNRG	ENSCJAP00000012691	ENSCJAP00000028122	Aftiphilin isoform c.	Synergin gamma isoform 1.	0.624
AGFG1	AFTPH	ENSCJAP00000023909	ENSCJAP00000012691	Arf-GAP domain and FG repeat-containing protein 1 isoform 1.	Aftiphilin isoform c.	0.603
AGFG1	HPS5	ENSCJAP00000023909	ENSCJAP00000013372	Arf-GAP domain and FG repeat-containing protein 1 isoform 1.	Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.	0.569
AGFG1	RASL10A	ENSCJAP00000023909	ENSCJAP00000037159	Arf-GAP domain and FG repeat-containing protein 1 isoform 1.	Ras-like protein family member 10A.	0.569
AP1M1	AFTPH	ENSCJAP00000025878	ENSCJAP00000012691	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Aftiphilin isoform c.	0.604
AP1M1	AP1M2-2	ENSCJAP00000025878	ENSCJAP00000052882	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.901
AP1M1	AP1S2	ENSCJAP00000025878	ENSCJAP00000069606	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Clat_adaptor_s domain-containing protein.	0.966
AP1M1	AP1S3	ENSCJAP00000025878	ENSCJAP00000053761	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.974
AP1M1	ENSCJAP00000071587	ENSCJAP00000025878	ENSCJAP00000071587	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.786
AP1M2	AFTPH	ENSCJAP00000063951	ENSCJAP00000012691	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Aftiphilin isoform c.	0.604
AP1M2	AP1S2	ENSCJAP00000063951	ENSCJAP00000069606	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Clat_adaptor_s domain-containing protein.	0.786