EML1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EML1

Echinoderm microtubule-associated protein-like 1 isoform a. (834 aa)

Predicted Functional Partners:

EML4

0.894

F7IHJ4_CALJA

0.809

TUBB2B

0.773

PAFAH1B1

0.729

EML2

0.706

TUBB2A

0.700

NDEL1

0.692

MOB2

0.680

NDE1

0.676

ISG20L2

0.675

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EML1	EML2	ENSCJAP00000012794	ENSCJAP00000022925	Echinoderm microtubule-associated protein-like 1 isoform a.	EMAP like 2.	0.706
EML1	EML4	ENSCJAP00000012794	ENSCJAP00000027215	Echinoderm microtubule-associated protein-like 1 isoform a.	EMAP like 4.	0.894
EML1	F7IHJ4_CALJA	ENSCJAP00000012794	ENSCJAP00000008824	Echinoderm microtubule-associated protein-like 1 isoform a.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.809
EML1	ISG20L2	ENSCJAP00000012794	ENSCJAP00000015164	Echinoderm microtubule-associated protein-like 1 isoform a.	Interferon stimulated exonuclease gene 20 like 2.	0.675
EML1	MOB2	ENSCJAP00000012794	ENSCJAP00000033989	Echinoderm microtubule-associated protein-like 1 isoform a.	MOB kinase activator 2.	0.680
EML1	NDE1	ENSCJAP00000012794	ENSCJAP00000072461	Echinoderm microtubule-associated protein-like 1 isoform a.	NudE neurodevelopment protein 1.	0.676
EML1	NDEL1	ENSCJAP00000012794	ENSCJAP00000026412	Echinoderm microtubule-associated protein-like 1 isoform a.	Nuclear distribution protein nudE-like 1 isoform B.	0.692
EML1	PAFAH1B1	ENSCJAP00000012794	ENSCJAP00000022630	Echinoderm microtubule-associated protein-like 1 isoform a.	Platelet-activating factor acetylhydrolase IB subunit alpha; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ven [...]	0.729
EML1	TUBB2A	ENSCJAP00000012794	ENSCJAP00000024098	Echinoderm microtubule-associated protein-like 1 isoform a.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.700
EML1	TUBB2B	ENSCJAP00000012794	ENSCJAP00000032610	Echinoderm microtubule-associated protein-like 1 isoform a.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.773
EML2	EML1	ENSCJAP00000022925	ENSCJAP00000012794	EMAP like 2.	Echinoderm microtubule-associated protein-like 1 isoform a.	0.706
EML2	PAFAH1B1	ENSCJAP00000022925	ENSCJAP00000022630	EMAP like 2.	Platelet-activating factor acetylhydrolase IB subunit alpha; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ven [...]	0.445
EML2	TUBB2A	ENSCJAP00000022925	ENSCJAP00000024098	EMAP like 2.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.687
EML2	TUBB2B	ENSCJAP00000022925	ENSCJAP00000032610	EMAP like 2.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.687
EML4	EML1	ENSCJAP00000027215	ENSCJAP00000012794	EMAP like 4.	Echinoderm microtubule-associated protein-like 1 isoform a.	0.894
EML4	NDEL1	ENSCJAP00000027215	ENSCJAP00000026412	EMAP like 4.	Nuclear distribution protein nudE-like 1 isoform B.	0.449
EML4	PAFAH1B1	ENSCJAP00000027215	ENSCJAP00000022630	EMAP like 4.	Platelet-activating factor acetylhydrolase IB subunit alpha; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ven [...]	0.449
EML4	TUBB2A	ENSCJAP00000027215	ENSCJAP00000024098	EMAP like 4.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.575
EML4	TUBB2B	ENSCJAP00000027215	ENSCJAP00000032610	EMAP like 4.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.575
F7IHJ4_CALJA	EML1	ENSCJAP00000008824	ENSCJAP00000012794	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Echinoderm microtubule-associated protein-like 1 isoform a.	0.809