STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TM9SF1Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (605 aa)    
Predicted Functional Partners:
CHMP2A
Charged multivesicular body protein 2A.
   
 0.959
CHMP3
Uncharacterized protein.
   
 0.951
SNF8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.915
PTPN23
Protein tyrosine phosphatase non-receptor type 23.
   
 0.879
VPS4B
Vacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family.
   
 0.862
VPS4A
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.862
CHMP1A
Charged multivesicular body protein 1A.
    
 0.860
CHMP6
Charged multivesicular body protein 6.
    
 0.848
C17orf75
Chromosome 17 open reading frame 75.
    
 0.848
TSG101
Uncharacterized protein.
   
 0.846
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.