STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTRAFRNA transcription, translation and transport factor. (244 aa)    
Predicted Functional Partners:
DDX1
ATP-dependent RNA helicase DDX1.
   
 0.969
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.941
FAM98B
Family with sequence similarity 98 member B.
    
 0.928
SLFNL1
Schlafen like 1.
   
 0.892
ENSCJAP00000068556
Uncharacterized protein.
    
 
 0.887
C2orf49
Chromosome 2 open reading frame 49.
    
 0.886
FAM98C
Family with sequence similarity 98 member C.
    
 
 0.781
LSM12
LSM12 homolog.
    
 
 0.614
NIN
Ninein.
    
 
 0.583
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
  
 0.562
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.