Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF144BRBR-type E3 ubiquitin transferase. (303 aa)    
Predicted Functional Partners:
RNF223
RING finger protein 223.
    
 0.784
RNF183
Ring finger protein 183.
    
 0.780
RNFT2
Ring finger protein, transmembrane 2.
      
 0.776
TMEM129
Transmembrane protein 129.
   
  
 0.771
RNF130
E3 ubiquitin-protein ligase RNF130.
     
 0.738
RNFT1
Ring finger protein, transmembrane 1.
      
 0.729
TMEM150A
Transmembrane protein 150A.
      
 0.681
RNF216
E3 ubiquitin-protein ligase RNF216 isoform a.
   
 0.626
HSPH1
Heat shock protein family H (Hsp110) member 1.
      
 0.619
RBM43
RNA binding motif protein 43.
      
 0.585
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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