STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MATR3Matrin-3 isoform a. (847 aa)    
Predicted Functional Partners:
TARDBP
TAR DNA-binding protein 43.
   
 
 0.792
DDX5
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
   
 0.755
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.740
HNRNPA2B1
Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.
   
 
 0.721
ENSCJAP00000076803
FUS RNA binding protein.
   
 0.714
HNRNPF
Heterogeneous nuclear ribonucleoprotein F.
   
 
 0.696
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform a.
   
 
 0.691
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 0.682
NEK1
NIMA related kinase 1.
   
 0.673
BCLAF1
Uncharacterized protein.
  
 0.657
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.