Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYDE2Synapse defective Rho GTPase homolog 2. (1194 aa)    
Predicted Functional Partners:
RHOG
Rho-related GTP-binding protein RhoG.
   
 0.787
RASL11B
Ras-like protein family member 11B.
    
 0.750
CBR1
Carbonyl reductase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.672
CRK
CRK proto-oncogene, adaptor protein.
      
 0.664
GCM1
Glial cells missing transcription factor 1.
      
 0.663
NLGN2
Neuroligin 2.
      
 0.655
ELP4
Elongator acetyltransferase complex subunit 4.
      
 0.648
ERC2
ELKS/RAB6-interacting/CAST family member 2.
    
 
 0.604
ERC1
ELKS/RAB6-interacting/CAST family member 1.
    
 
 0.604
GEN1
GEN1 Holliday junction 5' flap endonuclease.
      
 0.600
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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