STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE2Synapse defective Rho GTPase homolog 2. (1194 aa)    
Predicted Functional Partners:
RASL11B
Ras-like protein family member 11B.
    
 0.707
RHOG
Rho-related GTP-binding protein RhoG.
   
 0.703
MYO9B
Myosin IXB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.621
MYO9A
Myosin IXA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.621
ELP4
Elongator acetyltransferase complex subunit 4.
      
 0.576
CBR1
Carbonyl reductase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.561
CRK
CRK proto-oncogene, adaptor protein.
      
 0.558
NLGN2
Neuroligin 2.
      
 0.556
GCM1
Glial cells missing transcription factor 1.
      
 0.551
GEN1
GEN1 Holliday junction 5' flap endonuclease.
      
 0.526
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.