IPO4 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASF1A	ASF1B	ENSCJAP00000072949	ENSCJAP00000058462	Histone chaperone ASF1A.	Anti-silencing function 1B histone chaperone.	0.916
ASF1A	IPO4	ENSCJAP00000072949	ENSCJAP00000013016	Histone chaperone ASF1A.	Importin-4.	0.951
ASF1A	IPO5	ENSCJAP00000072949	ENSCJAP00000073439	Histone chaperone ASF1A.	Importin 5.	0.572
ASF1B	ASF1A	ENSCJAP00000058462	ENSCJAP00000072949	Anti-silencing function 1B histone chaperone.	Histone chaperone ASF1A.	0.916
ASF1B	IPO4	ENSCJAP00000058462	ENSCJAP00000013016	Anti-silencing function 1B histone chaperone.	Importin-4.	0.905
ASF1B	IPO5	ENSCJAP00000058462	ENSCJAP00000073439	Anti-silencing function 1B histone chaperone.	Importin 5.	0.572
GMPS	IPO4	ENSCJAP00000001517	ENSCJAP00000013016	Guanine monophosphate synthase.	Importin-4.	0.836
GMPS	IPO5	ENSCJAP00000001517	ENSCJAP00000073439	Guanine monophosphate synthase.	Importin 5.	0.749
GMPS	NAT10	ENSCJAP00000001517	ENSCJAP00000019721	Guanine monophosphate synthase.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.724
GMPS	POLR1A	ENSCJAP00000001517	ENSCJAP00000036331	Guanine monophosphate synthase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.775
GMPS	RRP12	ENSCJAP00000001517	ENSCJAP00000076839	Guanine monophosphate synthase.	Ribosomal RNA processing 12 homolog.	0.418
IPO4	ASF1A	ENSCJAP00000013016	ENSCJAP00000072949	Importin-4.	Histone chaperone ASF1A.	0.951
IPO4	ASF1B	ENSCJAP00000013016	ENSCJAP00000058462	Importin-4.	Anti-silencing function 1B histone chaperone.	0.905
IPO4	GMPS	ENSCJAP00000013016	ENSCJAP00000001517	Importin-4.	Guanine monophosphate synthase.	0.836
IPO4	IPO5	ENSCJAP00000013016	ENSCJAP00000073439	Importin-4.	Importin 5.	0.932
IPO4	KPNB1	ENSCJAP00000013016	ENSCJAP00000014713	Importin-4.	Karyopherin subunit beta 1.	0.869
IPO4	NAT10	ENSCJAP00000013016	ENSCJAP00000019721	Importin-4.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.819
IPO4	POLR1A	ENSCJAP00000013016	ENSCJAP00000036331	Importin-4.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.837
IPO4	RRP12	ENSCJAP00000013016	ENSCJAP00000076839	Importin-4.	Ribosomal RNA processing 12 homolog.	0.857
IPO4	TNPO1	ENSCJAP00000013016	ENSCJAP00000030345	Importin-4.	Transportin-1 isoform 1.	0.848