STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSD1Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific isoform b. (2692 aa)    
Predicted Functional Partners:
ZNF470
Zinc finger protein 470.
   
 0.800
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
    
 0.771
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1.
    
 0.696
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
    
 0.696
EED
Embryonic ectoderm development.
   
 0.689
CAMKMT
Calmodulin-lysine N-methyltransferase.
     
 0.682
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
  
0.624
HUWE1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
   
  
 0.607
MRE11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.605
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
    
 0.598
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.