STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FUBP1Far upstream element binding protein 1. (655 aa)    
Predicted Functional Partners:
KHSRP
KH-type splicing regulatory protein.
   
   0.987
FUBP3
Far upstream element binding protein 3.
   
   0.954
PUF60
Poly(U) binding splicing factor 60.
   
 
 0.944
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.860
BRDT
Bromodomain testis associated.
   
 
 0.817
HNRNPR
Heterogeneous nuclear ribonucleoprotein R isoform 1.
   
 
 0.798
CPSF6
RRM domain-containing protein.
   
 
 0.793
AIMP2
Aminoacyl tRNA synthetase complex interacting multifunctional protein 2.
    
 
 0.787
HNRNPA2B1
Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.
   
 
 0.765
TK1
Thymidine kinase.
      
 0.764
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.