SAA1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SAA1

Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex. (120 aa)

Predicted Functional Partners:

APOB

0.612

APOA1

0.591

ACKR4

0.588

C4BPA

0.524

C4BPB

0.506

APOC3

0.503

SAA4

0.477

STEAP4

0.463

APOC2

0.452

FFAR2

0.448

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACKR4	SAA1	ENSCJAP00000076380	ENSCJAP00000013399	C-C chemokine receptor type 11; Belongs to the G-protein coupled receptor 1 family.	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.	0.588
ACKR4	STEAP4	ENSCJAP00000076380	ENSCJAP00000052524	C-C chemokine receptor type 11; Belongs to the G-protein coupled receptor 1 family.	STEAP4 metalloreductase.	0.564
APOA1	APOB	ENSCJAP00000023173	ENSCJAP00000014061	Apolipoprotein A1.	Apolipoprotein B.	0.995
APOA1	APOC2	ENSCJAP00000023173	ENSCJAP00000023943	Apolipoprotein A1.	Apolipoprotein C-II.	0.967
APOA1	APOC3	ENSCJAP00000023173	ENSCJAP00000044348	Apolipoprotein A1.	Apolipoprotein C3.	0.990
APOA1	SAA1	ENSCJAP00000023173	ENSCJAP00000013399	Apolipoprotein A1.	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.	0.591
APOA1	SAA4	ENSCJAP00000023173	ENSCJAP00000074608	Apolipoprotein A1.	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.	0.599
APOB	APOA1	ENSCJAP00000014061	ENSCJAP00000023173	Apolipoprotein B.	Apolipoprotein A1.	0.995
APOB	APOC2	ENSCJAP00000014061	ENSCJAP00000023943	Apolipoprotein B.	Apolipoprotein C-II.	0.922
APOB	APOC3	ENSCJAP00000014061	ENSCJAP00000044348	Apolipoprotein B.	Apolipoprotein C3.	0.986
APOB	SAA1	ENSCJAP00000014061	ENSCJAP00000013399	Apolipoprotein B.	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.	0.612
APOB	SAA4	ENSCJAP00000014061	ENSCJAP00000074608	Apolipoprotein B.	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.	0.602
APOC2	APOA1	ENSCJAP00000023943	ENSCJAP00000023173	Apolipoprotein C-II.	Apolipoprotein A1.	0.967
APOC2	APOB	ENSCJAP00000023943	ENSCJAP00000014061	Apolipoprotein C-II.	Apolipoprotein B.	0.922
APOC2	APOC3	ENSCJAP00000023943	ENSCJAP00000044348	Apolipoprotein C-II.	Apolipoprotein C3.	0.996
APOC2	SAA1	ENSCJAP00000023943	ENSCJAP00000013399	Apolipoprotein C-II.	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.	0.452
APOC2	SAA4	ENSCJAP00000023943	ENSCJAP00000074608	Apolipoprotein C-II.	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.	0.424
APOC3	APOA1	ENSCJAP00000044348	ENSCJAP00000023173	Apolipoprotein C3.	Apolipoprotein A1.	0.990
APOC3	APOB	ENSCJAP00000044348	ENSCJAP00000014061	Apolipoprotein C3.	Apolipoprotein B.	0.986
APOC3	APOC2	ENSCJAP00000044348	ENSCJAP00000023943	Apolipoprotein C3.	Apolipoprotein C-II.	0.996