STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX1ATP-dependent RNA helicase DDX1. (740 aa)    
Predicted Functional Partners:
RTRAF
RNA transcription, translation and transport factor.
   
 0.969
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.962
DHX36
DEAH-box helicase 36.
   
 0.948
FAM98B
Family with sequence similarity 98 member B.
   
 0.931
ENSCJAP00000068556
Uncharacterized protein.
   
 
 0.924
C2orf49
Chromosome 2 open reading frame 49.
    
 0.868
DDX21
Nucleolar RNA helicase 2 isoform 1.
   
 
0.856
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.846
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.722
DHX9
DExH-box helicase 9.
   
 0.717
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.