Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL4A5Collagen alpha-5(IV) chain isoform 1. (1691 aa)    
Predicted Functional Partners:
COL4A6
Collagen type IV alpha 6 chain.
   
 0.931
CD44
CD44 molecule (Indian blood group).
   
 0.908
ENSCJAP00000068443
Uncharacterized protein.
     
  0.901
COL4A1
Collagen alpha-1(IV) chain preproprotein.
   
 0.884
COL8A2
Collagen type VIII alpha 2 chain.
    
 0.879
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
   
 0.824
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.787
COLGALT2
Collagen beta(1-O)galactosyltransferase 2.
    
 0.773
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
    
 0.771
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
   
 0.771
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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