GAD2 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GAD2

Glutamate decarboxylase 2. (585 aa)

Predicted Functional Partners:

GAD1

0.998

ABAT

0.975

GLUD1

0.949

SLC32A1

0.949

GLS

0.937

ENSCJAP00000064924

0.931

GLS2

0.926

CDO1

0.926

ALDH3A1

0.925

F7IP29_CALJA

0.925

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABAT	ALDH3A1	ENSCJAP00000031892	ENSCJAP00000021704	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase 3 family member A1; Belongs to the aldehyde dehydrogenase family.	0.939
ABAT	F7IP29_CALJA	ENSCJAP00000031892	ENSCJAP00000043791	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.939
ABAT	GAD1	ENSCJAP00000031892	ENSCJAP00000066747	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase 1.	0.980
ABAT	GAD2	ENSCJAP00000031892	ENSCJAP00000014009	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase 2.	0.975
ABAT	GLUD1	ENSCJAP00000031892	ENSCJAP00000021577	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.793
ALDH3A1	ABAT	ENSCJAP00000021704	ENSCJAP00000031892	Aldehyde dehydrogenase 3 family member A1; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.939
ALDH3A1	F7IP29_CALJA	ENSCJAP00000021704	ENSCJAP00000043791	Aldehyde dehydrogenase 3 family member A1; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.927
ALDH3A1	GAD1	ENSCJAP00000021704	ENSCJAP00000066747	Aldehyde dehydrogenase 3 family member A1; Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase 1.	0.925
ALDH3A1	GAD2	ENSCJAP00000021704	ENSCJAP00000014009	Aldehyde dehydrogenase 3 family member A1; Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase 2.	0.925
ALDH3A1	GLUD1	ENSCJAP00000021704	ENSCJAP00000021577	Aldehyde dehydrogenase 3 family member A1; Belongs to the aldehyde dehydrogenase family.	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.413
CDO1	GAD1	ENSCJAP00000030822	ENSCJAP00000066747	Cysteine dioxygenase.	Glutamate decarboxylase 1.	0.927
CDO1	GAD2	ENSCJAP00000030822	ENSCJAP00000014009	Cysteine dioxygenase.	Glutamate decarboxylase 2.	0.926
ENSCJAP00000064924	GAD1	ENSCJAP00000064924	ENSCJAP00000066747	annotation not available	Glutamate decarboxylase 1.	0.939
ENSCJAP00000064924	GAD2	ENSCJAP00000064924	ENSCJAP00000014009	annotation not available	Glutamate decarboxylase 2.	0.931
ENSCJAP00000064924	GLS	ENSCJAP00000064924	ENSCJAP00000046317	annotation not available	Glutaminase kidney isoform, mitochondrial isoform 1.	0.957
ENSCJAP00000064924	GLS2	ENSCJAP00000064924	ENSCJAP00000020223	annotation not available	Glutaminase 2.	0.958
ENSCJAP00000064924	GLUD1	ENSCJAP00000064924	ENSCJAP00000021577	annotation not available	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.961
F7IP29_CALJA	ABAT	ENSCJAP00000043791	ENSCJAP00000031892	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.939
F7IP29_CALJA	ALDH3A1	ENSCJAP00000043791	ENSCJAP00000021704	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 3 family member A1; Belongs to the aldehyde dehydrogenase family.	0.927
F7IP29_CALJA	GAD1	ENSCJAP00000043791	ENSCJAP00000066747	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase 1.	0.925