STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL4A6Collagen type IV alpha 6 chain. (1705 aa)    
Predicted Functional Partners:
COL4A5
Collagen alpha-5(IV) chain isoform 1.
  
0.932
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.917
COL4A3
Collagen type IV alpha 3 chain.
  
0.868
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
    
 0.830
ITGAV
Integrin alpha-V isoform 1; Belongs to the integrin alpha chain family.
    
 0.766
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.761
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.754
COL14A1
Collagen type XIV alpha 1 chain.
   
0.753
COL4A1
Collagen alpha-1(IV) chain preproprotein.
  
0.729
ITGA5
Integrin subunit alpha 5; Belongs to the integrin alpha chain family.
   
 0.728
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.