STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC22ASEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family. (501 aa)    
Predicted Functional Partners:
YKT6
Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.
    
 0.978
STX5
Syntaxin-5 isoform 1; Belongs to the syntaxin family.
   
 0.957
BET1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.955
STX18
Syntaxin 18.
   
 0.927
SCFD1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.922
BNIP1
Vesicle transport protein SEC20 isoform BNIP1.
   
 0.910
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.903
BET1L
Bet1 golgi vesicular membrane trafficking protein like.
   
 0.893
USE1
Unconventional SNARE in the ER 1.
    
 0.888
RINT1
RAD50-interacting protein 1.
    
 0.880
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.