STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARID5AAT-rich interactive domain-containing protein 5A. (594 aa)    
Predicted Functional Partners:
LOC100412999
CAP-ZIP_m domain-containing protein.
   
  
 0.908
LIN54
Lin-54 DREAM MuvB core complex component.
   
  
 0.787
SAP30
Histone deacetylase complex subunit SAP30.
    
 0.674
PBRM1
Polybromo 1.
   
 
 0.640
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.636
POLD1
DNA polymerase.
   
  
 0.618
SAP30L
Histone deacetylase complex subunit SAP30L isoform 1.
    
 0.602
NUFIP2
Nuclear fragile X mental retardation-interacting protein 2.
      
 0.564
ENSCJAP00000071638
Uncharacterized protein.
   
  
 0.562
RBL2
RB transcriptional corepressor like 2.
    
 
 0.533
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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