WDR70 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WDR70

WD repeat-containing protein 70. (653 aa)

Predicted Functional Partners:

DHX38

0.993

CWC22

0.987

CDC40

0.967

PPWD1

0.966

PPIL1

0.963

CWC25

0.962

BUD31

0.958

CRNKL1

0.930

MTREX

0.928

DHX35

0.928

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BUD31	CDC40	ENSCJAP00000029165	ENSCJAP00000009944	BUD31 homolog.	Cell division cycle 40.	0.953
BUD31	CRNKL1	ENSCJAP00000029165	ENSCJAP00000045531	BUD31 homolog.	Crooked neck pre-mRNA splicing factor 1.	0.998
BUD31	CWC22	ENSCJAP00000029165	ENSCJAP00000058894	BUD31 homolog.	MIF4G domain-containing protein.	0.983
BUD31	CWC25	ENSCJAP00000029165	ENSCJAP00000015308	BUD31 homolog.	CWC25 spliceosome associated protein homolog.	0.805
BUD31	DHX35	ENSCJAP00000029165	ENSCJAP00000063319	BUD31 homolog.	DEAH-box helicase 35.	0.774
BUD31	DHX38	ENSCJAP00000029165	ENSCJAP00000027841	BUD31 homolog.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.	0.980
BUD31	PPIL1	ENSCJAP00000029165	ENSCJAP00000074870	BUD31 homolog.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.866
BUD31	PPWD1	ENSCJAP00000029165	ENSCJAP00000029068	BUD31 homolog.	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.580
BUD31	WDR70	ENSCJAP00000029165	ENSCJAP00000014439	BUD31 homolog.	WD repeat-containing protein 70.	0.958
CDC40	BUD31	ENSCJAP00000009944	ENSCJAP00000029165	Cell division cycle 40.	BUD31 homolog.	0.953
CDC40	CRNKL1	ENSCJAP00000009944	ENSCJAP00000045531	Cell division cycle 40.	Crooked neck pre-mRNA splicing factor 1.	0.961
CDC40	CWC22	ENSCJAP00000009944	ENSCJAP00000058894	Cell division cycle 40.	MIF4G domain-containing protein.	0.987
CDC40	CWC25	ENSCJAP00000009944	ENSCJAP00000015308	Cell division cycle 40.	CWC25 spliceosome associated protein homolog.	0.986
CDC40	DHX35	ENSCJAP00000009944	ENSCJAP00000063319	Cell division cycle 40.	DEAH-box helicase 35.	0.972
CDC40	DHX38	ENSCJAP00000009944	ENSCJAP00000027841	Cell division cycle 40.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.	0.994
CDC40	MTREX	ENSCJAP00000009944	ENSCJAP00000055569	Cell division cycle 40.	Superkiller viralicidic activity 2-like 2.	0.940
CDC40	PPIL1	ENSCJAP00000009944	ENSCJAP00000074870	Cell division cycle 40.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.987
CDC40	PPWD1	ENSCJAP00000009944	ENSCJAP00000029068	Cell division cycle 40.	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.971
CDC40	WDR70	ENSCJAP00000009944	ENSCJAP00000014439	Cell division cycle 40.	WD repeat-containing protein 70.	0.967
CRNKL1	BUD31	ENSCJAP00000045531	ENSCJAP00000029165	Crooked neck pre-mRNA splicing factor 1.	BUD31 homolog.	0.998