STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TLNRD1Mesoderm development candidate 1. (358 aa)    
Predicted Functional Partners:
VCL
Vinculin.
   
 0.947
MESD
Mesoderm development LRP chaperone.
  
   
 0.918
TMC3
Transmembrane channel-like protein.
    
 0.904
PIP5K1C
Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma.
    
 0.884
APBB1IP
Amyloid beta precursor protein binding family B member 1 interacting protein.
    
 0.836
FSCN3
Fascin.
      
 0.780
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.758
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.744
CTNNA1
Catenin alpha 1.
   
 0.733
PIP5K1A
Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform 2.
    
 0.733
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.