STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTF1APancreas associated transcription factor 1a. (332 aa)    
Predicted Functional Partners:
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.873
FOXN4
Forkhead box N4.
   
 
 0.851
BARHL2
BarH like homeobox 2.
   
 
 0.738
ISL1
Insulin gene enhancer protein ISL-1.
   
 0.736
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
   
 0.704
VSX1
Visual system homeobox 1.
   
  
 0.692
ZIC2
Zic family member 2.
   
 
 0.659
IRX5
Iroquois homeobox 5.
   
  
 0.651
GDF11
Growth differentiation factor 11.
   
  
 0.650
AGO1
Argonaute RISC component 1; Belongs to the argonaute family.
    
 
 0.648
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.