Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APEX1 | ENSCJAP00000063570 | ENSCJAP00000017864 | ENSCJAP00000063570 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | FPG_CAT domain-containing protein. | 0.461 |
| APEX1 | FEN1 | ENSCJAP00000017864 | ENSCJAP00000073687 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.976 |
| APEX1 | LIG1 | ENSCJAP00000017864 | ENSCJAP00000000886 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | DNA ligase. | 0.931 |
| APEX1 | LIG3 | ENSCJAP00000017864 | ENSCJAP00000057467 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | DNA ligase. | 0.750 |
| APEX1 | PARP1 | ENSCJAP00000017864 | ENSCJAP00000072405 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Poly [ADP-ribose] polymerase. | 0.813 |
| APEX1 | PARP2 | ENSCJAP00000017864 | ENSCJAP00000018292 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Poly [ADP-ribose] polymerase. | 0.834 |
| APEX1 | PNKP | ENSCJAP00000017864 | ENSCJAP00000007536 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Polynucleotide kinase 3'-phosphatase. | 0.658 |
| APEX1 | POLB | ENSCJAP00000017864 | ENSCJAP00000014753 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.922 |
| APEX1 | TDP1 | ENSCJAP00000017864 | ENSCJAP00000032563 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Tyrosyl-DNA phosphodiesterase 1. | 0.676 |
| APEX1 | XRCC1 | ENSCJAP00000017864 | ENSCJAP00000024994 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | X-ray repair cross complementing 1. | 0.858 |
| ENSCJAP00000063570 | APEX1 | ENSCJAP00000063570 | ENSCJAP00000017864 | FPG_CAT domain-containing protein. | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | 0.461 |
| ENSCJAP00000063570 | FEN1 | ENSCJAP00000063570 | ENSCJAP00000073687 | FPG_CAT domain-containing protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.644 |
| ENSCJAP00000063570 | LIG1 | ENSCJAP00000063570 | ENSCJAP00000000886 | FPG_CAT domain-containing protein. | DNA ligase. | 0.545 |
| ENSCJAP00000063570 | LIG3 | ENSCJAP00000063570 | ENSCJAP00000057467 | FPG_CAT domain-containing protein. | DNA ligase. | 0.636 |
| ENSCJAP00000063570 | PARP1 | ENSCJAP00000063570 | ENSCJAP00000072405 | FPG_CAT domain-containing protein. | Poly [ADP-ribose] polymerase. | 0.428 |
| ENSCJAP00000063570 | PNKP | ENSCJAP00000063570 | ENSCJAP00000007536 | FPG_CAT domain-containing protein. | Polynucleotide kinase 3'-phosphatase. | 0.819 |
| ENSCJAP00000063570 | POLB | ENSCJAP00000063570 | ENSCJAP00000014753 | FPG_CAT domain-containing protein. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.891 |
| ENSCJAP00000063570 | TDP1 | ENSCJAP00000063570 | ENSCJAP00000032563 | FPG_CAT domain-containing protein. | Tyrosyl-DNA phosphodiesterase 1. | 0.590 |
| ENSCJAP00000063570 | XRCC1 | ENSCJAP00000063570 | ENSCJAP00000024994 | FPG_CAT domain-containing protein. | X-ray repair cross complementing 1. | 0.844 |
| FEN1 | APEX1 | ENSCJAP00000073687 | ENSCJAP00000017864 | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | 0.976 |
page 1 of 6