STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX4LIM homeobox 4. (390 aa)    
Predicted Functional Partners:
ISL1
Insulin gene enhancer protein ISL-1.
   
0.884
ISL2
ISL LIM homeobox 2.
   
0.859
LDB1
LIM domain binding 1.
    
 0.777
PRL
Growth hormone A1.
   
  
 0.750
BSX
Brain specific homeobox.
  
   
 0.729
ALX3
ALX homeobox 3.
   
0.725
PITX1
Homeobox protein.
   
  
 0.699
POU1F1
POU domain protein.
   
 
 0.687
LDB2
LIM domain-binding protein 2 isoform a.
    
 0.673
SCAI
Protein SCAI; Tumor suppressor which functions to suppress MRTFA-induced SRF transcriptional activity.
      
 0.643
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.