STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXA1Homeobox A1. (333 aa)    
Predicted Functional Partners:
HOXB1
Homeobox B1.
  
0.937
HOXD1
Homeobox D1.
     
 
0.900
GP9
Glycoprotein IX platelet.
    
   0.714
PBX1
Pre-B-cell leukemia transcription factor 1 isoform 1.
    
 0.694
SPRY1
Sprouty RTK signaling antagonist 1.
    
 
 0.682
PBX2
PBX homeobox 2.
    
 0.665
PBX3
Pre-B-cell leukemia transcription factor 3 isoform 1.
    
 0.665
GDAP1
Ganglioside-induced differentiation-associated protein 1 isoform a; Belongs to the GST superfamily.
      
 0.571
NCKAP1
NCK associated protein 1.
      
 0.564
CASP8AP2
Caspase 8 associated protein 2.
      
 0.487
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.