HOXA5 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HOXA5

Homeobox A5 (Predicted). (270 aa)

Predicted Functional Partners:

HOXA3

0.778

FOXC2

0.723

NFATC2

0.645

HOXA2

0.607

PBX1

0.583

HOXB5

0.567

TBX15

0.534

HOXB8

0.516

HOXA7

0.500

HOXB2

0.485

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXC2	HOXA5	ENSCJAP00000053582	ENSCJAP00000014883	Forkhead box C2.	Homeobox A5 (Predicted).	0.723
FOXC2	NFATC2	ENSCJAP00000053582	ENSCJAP00000054326	Forkhead box C2.	Nuclear factor of activated T cells 2.	0.650
HOXA2	HOXA3	ENSCJAP00000014849	ENSCJAP00000014863	Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.	Homeobox A3 isoform a (Predicted).	0.732
HOXA2	HOXA5	ENSCJAP00000014849	ENSCJAP00000014883	Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.	Homeobox A5 (Predicted).	0.607
HOXA2	HOXB5	ENSCJAP00000014849	ENSCJAP00000013895	Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.	Homeobox B5.	0.562
HOXA2	HOXB8	ENSCJAP00000014849	ENSCJAP00000059796	Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.	Homeobox B8.	0.404
HOXA2	PBX1	ENSCJAP00000014849	ENSCJAP00000008611	Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.	Pre-B-cell leukemia transcription factor 1 isoform 1.	0.635
HOXA3	HOXA2	ENSCJAP00000014863	ENSCJAP00000014849	Homeobox A3 isoform a (Predicted).	Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.	0.732
HOXA3	HOXA5	ENSCJAP00000014863	ENSCJAP00000014883	Homeobox A3 isoform a (Predicted).	Homeobox A5 (Predicted).	0.778
HOXA3	HOXA7	ENSCJAP00000014863	ENSCJAP00000055664	Homeobox A3 isoform a (Predicted).	Homeobox A7 (Predicted).	0.687
HOXA3	HOXB2	ENSCJAP00000014863	ENSCJAP00000013928	Homeobox A3 isoform a (Predicted).	Homeobox protein Hox-B2.	0.480
HOXA3	HOXB5	ENSCJAP00000014863	ENSCJAP00000013895	Homeobox A3 isoform a (Predicted).	Homeobox B5.	0.455
HOXA3	HOXB8	ENSCJAP00000014863	ENSCJAP00000059796	Homeobox A3 isoform a (Predicted).	Homeobox B8.	0.449
HOXA3	PBX1	ENSCJAP00000014863	ENSCJAP00000008611	Homeobox A3 isoform a (Predicted).	Pre-B-cell leukemia transcription factor 1 isoform 1.	0.633
HOXA5	FOXC2	ENSCJAP00000014883	ENSCJAP00000053582	Homeobox A5 (Predicted).	Forkhead box C2.	0.723
HOXA5	HOXA2	ENSCJAP00000014883	ENSCJAP00000014849	Homeobox A5 (Predicted).	Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.	0.607
HOXA5	HOXA3	ENSCJAP00000014883	ENSCJAP00000014863	Homeobox A5 (Predicted).	Homeobox A3 isoform a (Predicted).	0.778
HOXA5	HOXA7	ENSCJAP00000014883	ENSCJAP00000055664	Homeobox A5 (Predicted).	Homeobox A7 (Predicted).	0.500
HOXA5	HOXB2	ENSCJAP00000014883	ENSCJAP00000013928	Homeobox A5 (Predicted).	Homeobox protein Hox-B2.	0.485
HOXA5	HOXB5	ENSCJAP00000014883	ENSCJAP00000013895	Homeobox A5 (Predicted).	Homeobox B5.	0.567