STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXA4Homeobox A4 (Predicted). (322 aa)    
Predicted Functional Partners:
HOXD4
Homeobox protein Hox-D4.
   
    0.894
HOXA3
Homeobox A3 isoform a (Predicted).
   
  
0.711
HOXA2
Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily.
   
 
0.554
EIF2D
Eukaryotic translation initiation factor 2D.
      
 0.545
PBX1
Pre-B-cell leukemia transcription factor 1 isoform 1.
    
 0.528
PAX8
Paired box 8.
    
 
 0.502
JADE2
Jade family PHD finger 2.
      
 0.470
HOXA6
Homeobox A6.
   
  
 0.448
DNAL4
Dynein light chain.
      
 0.442
PGAM2
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
      
 0.441
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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