STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF128E3 ubiquitin-protein ligase RNF128 isoform 1. (428 aa)    
Predicted Functional Partners:
OTUB1
Ubiquitin thioesterase.
    
 0.804
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.702
USP8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
    
 0.690
S100Z
Protein S100; Belongs to the S-100 family.
      
 0.645
SLC39A14
Solute carrier family 39 member 14.
      
 0.645
CCDC197
Coiled-coil domain containing 197.
    
 0.626
TMEM37
Transmembrane protein 37.
      
 0.613
RNF150
RING finger protein 150.
   
0.598
CALU
Calumenin.
      
 0.596
SLITRK6
SLIT and NTRK like family member 6.
      
 0.580
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.