STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOXHD1Lipoxygenase homology domains 1. (2278 aa)    
Predicted Functional Partners:
AGBL1
ATP/GTP binding protein like 1.
     
 0.910
KANK4
KN motif and ankyrin repeat domains 4.
    
 0.822
COL8A2
Collagen type VIII alpha 2 chain.
    
 0.778
SLC4A11
Solute carrier family 4 member 11.
      
 0.753
TRIOBP
TRIO and F-actin binding protein.
      
 0.684
RNF213
Ring finger protein 213.
    
 0.670
SLC12A2
Solute carrier family 12 member 2 isoform 1.
    
 0.652
SLC4A7
Anion exchange protein.
   
  
 0.642
OTOF
Otoferlin.
      
 0.618
MYO3A
Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.590
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.