STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXD4Homeobox protein Hox-D4. (256 aa)    
Predicted Functional Partners:
HOXD3
Homeobox D3.
  
  
0.904
HOXB5
Homeobox B5.
   
 
0.760
HOXB7
Homeobox protein Hox-B7.
   
 
0.744
HOXC4
Homeobox C4.
  
 
0.726
HOXB6
Homeobox protein Hox-B6.
   
 
0.701
HOXA7
Homeobox A7 (Predicted).
   
 
0.690
HOXB4
Homeobox B4.
  
 
0.676
HOXC6
Homeobox C6.
   
 
0.659
HOXC5
Homeobox C5.
   
  
0.626
HOXA6
Homeobox A6.
    
  
0.587
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.