STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNRNPFHeterogeneous nuclear ribonucleoprotein F. (414 aa)    
Predicted Functional Partners:
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform a.
   
 0.867
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.842
HNRNPA2B1
Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.
   
 0.835
HNRNPC
Heterogeneous nuclear ribonucleoproteins C1/C2 isoform a.
   
 0.827
HNRNPU
Heterogeneous nuclear ribonucleoprotein U isoform a.
   
 0.767
DDX5
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
   
 
 0.710
HNRNPL
Uncharacterized protein.
   
 0.705
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform a.
   
 0.701
MATR3
Matrin-3 isoform a.
   
 
 0.696
NCBP2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
   
 0.689
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.