Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHROOM4Shroom family member 4. (1501 aa)    
Predicted Functional Partners:
SKIV2L
Ski2 like RNA helicase.
      
 0.821
PDE6C
Phosphodiesterase.
      
 0.711
GLOD5
Glyoxalase domain containing 5.
    
 0.564
ALMS1
ALMS1 centrosome and basal body associated protein.
  
 0.558
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.556
INO80C
INO80 complex subunit C isoform 2.
    
 0.537
ACTR8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.536
MFHAS1
Malignant fibrous histiocytoma amplified sequence 1.
    
 0.536
ACTR5
Actin related protein 5; Belongs to the actin family.
    
 0.530
RUVBL1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.526
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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