STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LTN1Listerin E3 ubiquitin protein ligase 1. (1811 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor NEMF.
   
 0.989
TCF25
Transcription factor 25.
   
 0.981
ERMN
Ermin.
   
 0.893
NPLOC4
Nuclear protein localization protein 4 homolog.
   
 0.841
RPL35
Ribosomal protein L35.
    
 0.841
RPL18
Ribosomal protein L18.
    
  0.840
FAAP100
Fanconi anemia-associated protein of 100 kDa isoform b.
   
 0.799
RPL11
60S ribosomal protein L11 isoform 1; Belongs to the universal ribosomal protein uL5 family.
    
 0.768
UBC
Uncharacterized protein.
    
 0.768
ENSCJAP00000059313
Uncharacterized protein.
    
 0.768
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.