STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LTN1Listerin E3 ubiquitin protein ligase 1. (1811 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor NEMF.
    
 0.966
TRIP12
Uncharacterized protein.
   
 
 0.959
ERMN
Ermin.
    
 
 0.911
TCF25
Transcription factor 25.
   
 
 0.810
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 0.721
ZNF598
Zinc finger protein 598.
    
 
 0.711
RPL35
Ribosomal protein L35.
    
 
 0.702
RPL18
Ribosomal protein L18.
    
   0.696
RPL14
Ribosomal_L14e domain-containing protein.
    
   0.696
CNOT4
CCR4-NOT transcription complex subunit 4 isoform f.
    
 
 0.693
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.