STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM23RNA binding motif protein 23. (439 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.874
CDC5L
Cell division cycle 5-like protein.
   
 
 0.822
DCAF15
DDB1 and CUL4 associated factor 15.
    
 
 0.785
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.767
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 
 0.760
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.757
DDB1
Damage specific DNA binding protein 1.
    
 
 0.700
PRPF40A
Pre-mRNA processing factor 40 homolog A.
   
  0.700
SON
SON DNA-binding protein isoform F (Predicted).
   
  0.697
SRRM1
PWI domain-containing protein.
   
 0.688
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.